MRI Software

3D Slicer

software

visualization

medical imaging

3D Slicer is an open-source software platform used for visualization, segmentation, and modeling of medical imaging data in 3D.

Feb 28, 2025

Alexander Weber

ANTs

-software -registration

Advanced Normalization Tools

Sep 17, 2025

Alexander Weber

Freesurfer

-software -anatomical -visualization -segmentation -surface

An open source neuroimaging toolkit for processing, analyzing, and visualizing human brain MR images

Sep 17, 2025

Alexander Weber

MRIQC

quality control

software

visualization

MRIQC extracts no-reference IQMs (image quality metrics) from structural (T1w and T2w), functional and diffusion MRI (magnetic resonance imaging) data.

Oct 6, 2025

Alexander Weber

Tedana

-software -multi-echo -fmri -processing

Processing multi-echo fMRI data after it has been preprocessed by fmriprep

Sep 17, 2025

Alexander Weber

fmriprep

-software -fmri -reproducibility -standardization -preprocessing

An automated and standardized way of preprocessing fmri data

Sep 17, 2025

Alexander Weber

Categories

3D Slicer

ANTs

Freesurfer

MRIQC

Tedana

fmriprep